Shelf seas are important for global carbon cycling, but their carbonate system dynamics remain poorly understood due to complex spatial and temporal variability driven by interacting biological, physical and hydrological processes. To understand these complex dynamics, we focused on the Marsdiep channel at the Wadden Sea-North Sea interface, where strong tidal exchange creates ideal conditions for investigating carbonate system variability across multiple timescales. High-resolution (10-min) measurements of pH, combined with discrete sampling of dissolved inorganic carbon (DIC), total alkalinity (TA) and pH, were conducted over approximately one year between February 2022 and January 2023 at this location. We developed a multi-linear regression (MLR) model based on salinity and tidal data to predict TA (TApred) (RMSD = 17.5 µmol kg⁻¹), and subsequently calculated DIC from the TApred and pH (RMSD = 19.8 ± 1.9 µmol kg⁻¹). To evaluate the performance and long-term stability of the pH sensor, we applied a semivariogram approach - an approach not commonly used in this context - to estimate pH sensor uncertainty and drift patterns over time. We propose this method as a robust approach for assessing sensors performance in short and long-term deployments at sea, particularly when calibration sampling frequency is irregular. Results revealed pronounced diel and seasonal variability in pH (seasonal range: 0.6), DIC (419 µmol kg⁻¹), and TA (213.7 µmol kg⁻¹). These fluctuations reflected the interplay of biological and hydrological processes, with pH mainly controlled by biological process, TA by hydrological processes, and DIC influenced by the combination of both. We used the Wasserstein distance to quantify the balance of processes driving DIC at any given time. During this study period, the Wadden Sea acted as a net CO2 source to the atmosphere, with an annual release of 4.7 g-C m−2. A deeper understanding of the influence of biological and hydrological controls on the marine carbonate system is still needed to unravel the relative importance of the processes involved, especially in regions of higher complexities such as the Wadden Sea. Continuous high-frequency measurements may provide a tool to capture these dynamics across multiple time scales, from hourly to seasonal and interannual, in order to refine our understanding of their role in driving the carbonate system and in regional carbon cycling under changing climatic and hydrological conditions. (2025-10-10)